Systems Biology Markup Language Extension API
SBML is a defacto standard, developed and supported by a community of researchers (The SBML Team), visit SBML.org for detailed information about SBML
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Latest 1.01 release:
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Gene Transcription Factor Connectivity Network
An interchange format for exchanging gene transcription factor connectivity network data
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Latest 2.01 release:
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Gene Transcription Regulatory Elements
An interchange format for exchanging gene transcriptional regulatory elements network data
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Latest 2.01 release:
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TimeSeries
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Latest 1.01 release:
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MageML
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Latest 1.00 release:
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jUDM Data Type API Collection
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jUDM Data Type APIs for Dashboard
jUDM auto-generated Data Type collection:
- GeneTF
- GeneTRE
- SBML2ex
- TimeSeries
- MageML
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Latest 1.03 release:
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jUDM
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Java Wrapper for the UDM Core Technology
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Latest 1.03 release:
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Dashboard Add-on
- jUDM Package
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CORE TECHNOLOGIES
| UDM
Universal Data Model
Generates C++ API from UML class diagrams. The API can be used to
read/write XML files, GME databases, etc.
UDM Users Mailing List
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Latest r2.21 release:
Additional RPMs needed to run UDM on Linux Red Hat 7.x platforms:
Note: These are 3rd party software.
They were packaged by ISIS for the convenience of the UDM users and
the ease of UDM installation on Linux Redhat 7.x platforms.
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GReAT
Graph Rewriting And Transformation
A metamodel based graph transformation language useful for the specification and implementation of model-to-model transformations
GReAT Mailing List
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Latest r1.3.3 release:
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WOTIF
Web-based Open Tool Integration Framework
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Latest r1.3.6 release:
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